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Fitting Cormack-Jolly-Seber Models to Capture-Recapture Data using R2admb

This example provides a template to fit any fixed effects CJS model to capture-recapture data.  This template and code to create the .DAT file are used in the R package marked (https://github.com/jlaake/marked) when use.admb is TRUE. The pdf shows an example with the dipper data that is also analyzed with MARK (http://www.phidot.org/software/mark/)  through the RMark package (cran.r-project.org/web/packages/RMark/index.html) to show that the same results are obtained.

Model description

ADMB Files

 https://github.com/jlaake/ADMB-Examples/tree/master/Fixed%20Effect%20CJS