Activity

From 02/25/2012 to 03/25/2012

03/25/2012

11:57 pm Revision 363: Fix broken build for solaris studio.
Johnoel Ancheta
11:44 pm Revision 362: Fix g++ compiler warnings.
Johnoel Ancheta
11:41 pm Revision 361: Fix some g++ compiler warnings.
Johnoel Ancheta

03/24/2012

02:12 am Revision 360: Fix reported cppcheck error for allocation and deallocation of memory.
Johnoel Ancheta
07:49 pm Revision 359: Use 'md' instead of 'mkdir' in Windows makefiles (don't use coreutils)
Arni Magnusson
06:10 pm Feature #96 (Closed): Create announce email.
Johnoel Ancheta

03/22/2012

03:50 pm Revision 358: fixed line with more than 80 characters
ian
03:41 pm Revision 357: added new set_GRADSTACK_BUFFER_BYTES which has units in bytes just like -gbs
ian
01:51 pm Bug #90: memory allocation settings
current settings found in trunk/src/linad99/gradstrc.cpp
survey email sent to users list
Ian Taylor
01:49 pm Feature #95 (New): Show penalties to the objective function caused by bounded params
It would be a nice feature, if all penalties added to the objective function due to bounded parameters getting close ... Casper Berg
12:36 pm Revision 356: Since clang only 3.0 builds admb.
Johnoel Ancheta
11:35 am Feature #94 (In Progress): implement and document mcmc options
There are a variety of mcmc-related options that aren't fully implemented.
The mcsave option isn't implemented fo...
Ian Taylor
11:31 pm Feature #11 (Closed): value funtion for param_init_bounded_number_vector?
John Sibert
11:30 pm Feature #12 (Closed): char* get_name()
John Sibert
11:29 pm Feature #26 (Closed): = operator for adstring_array
John Sibert
11:13 pm Revision 355: Fix broken build for solaris studio.
Johnoel Ancheta
11:01 pm Revision 354: Use 'rd' instead of 'rmdir' in Windows makefiles (don't use coreutils)
Arni Magnusson
10:05 pm Revision 353: Don't copy sedflex to 'bin' directory
Arni Magnusson
09:17 pm Revision 352: Remove sed* files from scripts/g++, current ones in src/df1b2-separable
Arni Magnusson
08:35 pm Revision 351: Remove sedcmd* files, not used anywhere
Arni Magnusson
08:26 pm Revision 350: Remove sed1.exe from original-refcard.tex
Arni Magnusson
07:28 pm Revision 349: Added option to stop optimizing after pressing Ctrl-C
Casper Berg

03/21/2012

04:11 pm Support #53 (Resolved): Support Clang
Initial clang port in revision #348. Awaiting the buildbot and others... Johnoel Ancheta
04:07 pm Revision 348: [Issue #53] Ported with clang compiler.
Johnoel Ancheta
12:15 pm Revision 347: Delete remnants of 'stub' library from linux.mak and mingw.mak
Arni Magnusson
10:06 am Revision 346: Remove sed1.exe line from linux.mak
Arni Magnusson
10:00 am Revision 345: Remove sed1.exe
Arni Magnusson
09:02 am Revision 344: Fix whitespace etc in makefiles
Arni Magnusson

03/20/2012

02:58 pm Support #58: Windows installation
Ok, answer my own question.. Found the innosetup folder. I will work from those scripts. Johnoel if there are any ... Chris Grandin
02:46 pm Support #58: Windows installation
I'm trying to find out how the Windows 7 install exe is created. It looks like an *innosetup* project but who has th... Chris Grandin
11:35 am Support #93 (Closed): Valgrind tutorial
Write a Valgrind tutorial Mark Maunder
11:34 am Feature #92 (Closed): Developers workshop report
Write the developers workshop report Mark Maunder
11:33 am Feature #91 (New): Profile likelihood
Revisit the profile likelihood code to 1) extend it to RE models, 2) optionally change the method to augmented Lagran... Mark Maunder
11:33 am Bug #90 (Closed): memory allocation settings
Decide which memory allocation settings should have larger defaults Mark Maunder
11:32 am Bug #89 (In Progress): 64 bit version
Make sure the 64 bit versions work
Chnage long to longlong
Mark Maunder
11:31 am Support #88 (Closed): Example of how to change glmmadmb
Example how to take GLMMADMB and change it
This can be used in Courses
Mark Maunder
11:30 am Support #87 (Closed): glmmADMB Catalog of examples
Mark Maunder
11:30 am Bug #74: Solve function
Summing log of diagonal
When using Numerical recipes version need to maintain pivoting stuff in the current version
Mark Maunder
11:28 am Feature #86 (New): Amalgamation of tpl2cpp and tpl2rem
Amalgamation of tpl2cpp and tpl2rem. Make them one piece of code that share common code Mark Maunder
11:27 am Feature #85 (In Progress): Make functions to print out objects in debugging
Make functions to print out objects in debugging
Get these from MULTIFAN-CL
Mark Maunder
11:27 am Feature #84 (Closed): debug version of binaries
Should have a debug and no optimization version available for every compiler version Mark Maunder
11:26 am Support #83 (Closed): Protocol for providing errors to Dave (ADMB-GLMM)
Protocol for providing errors to Dave (ADMB-GLMM) Mark Maunder
11:25 am Feature #82 (New): Efficient robust minimizer that uses gradient and hessian in inner minimization
Efficient robust minimizer that uses gradient and hessian in inner minimization.
Make RE more robust
Mark Maunder
11:24 am Bug #81 (New): Automatically use Noinit when problematic convergence in ADMBre
Automatically use Noinit when problematic convergence in ADMBre Mark Maunder
11:23 am Feature #80 (Closed): Including contributed functions with build
Including contributed functions with build Chris Mark Maunder
11:22 am Support #79 (Closed): Reorganise and catalog contributed functions
reorganise and Catalog of contributed functions Mark Maunder
11:21 am Support #78 (Closed): Manual on how to use contributed functions
Write a manual on how to use contributed functions Molie/Steve Mark Maunder
11:21 am Support #77 (Closed): Tutorial on how to write contributed functions
How to write contributed functions
Basics Steve
Templates Mollie
Mark Maunder
11:20 am Support #76 (Closed): Website
Redesign the website
Mollie/Allan
Mark Maunder
11:19 am Support #75 (New): Ecological Examples
Put the ecological examples on the website Mark Maunder
11:18 am Bug #74 (Closed): Solve function
Fix the underflow error and rinstate the old version as an option Mark Maunder
11:17 am Bug #73 (New): -ilmn gradient
Fix the -ilmn gradient Mark Maunder
11:17 am Feature #72 (New): Spatial-temporal modeling
Add features to ADMB that facilitate Spatial-temporal modeling.
Hand and Anders
Mark Maunder
11:16 am Feature #71 (Closed): Priors section
Create verify and support the Priors section. Add examples to buildbot Mark Maunder
11:15 am Feature #70 (Closed): MPI on multiple cores
Implement and evaluate MPI on multiple cores
Derek/Teresa/Anders/Yukio
Mark Maunder
11:14 am Support #69 (Closed): Redmine, assigning tasks and nagging
Redmine, assigning tasks and nagging Mark Maunder
11:13 am Support #66: SVN and contribution technical tutorial
Ian Taylor to assist Mark Maunder
11:13 am Support #68 (Closed): Coding standards manual
Develop a coding standards manual
Johnoel and Matthew
Mark Maunder
11:12 am Support #67 (Closed): IDE debugger manual
Using debugger in IDE manual Mark Maunder
11:11 am Support #66 (Closed): SVN and contribution technical tutorial
SVN technical tutorial
Using SVN, building source, making changes, committing changes
Mark Maunder
11:09 am Support #65 (Closed): Doxygen documentation style guide
Develop a Doxygen documentation style guide
Mark Maunder
11:07 am Support #64 (Closed): Documentation: overall coordination and advice
Overall coordination and advice of documentation generation
Mark Maunder
11:05 am Support #63 (Closed): Building from source documentation
Ensure that the building from source documentation is corect and up to date
Mark Maunder
11:05 am Support #62 (Closed): Windows building from source
Ensure that building from source for windows works seamlessly
Mark Maunder
11:03 am Support #61 (Closed): Mac/Unix building from source
Ensure that building from source for the Mac/Unix works seamlessly Mark Maunder
11:02 am Support #60 (Closed): IDE building source
Ensure that building from source for the IDE works seamlessly Mark Maunder
11:00 am Support #59 (Closed): Installation Documentation
Ensure that the installation documentation is corect and up to date Mark Maunder
10:59 am Support #58 (Closed): Windows installation
Ensure that the installation for windows work seamlessly Mark Maunder
10:58 am Support #57 (Closed): Mac/Unix installation
Ensure that the installation for the Mac/Unix works seamlessly Mark Maunder
10:51 am Support #56 (Closed): IDE installation
Ensure that the installation for the IDE works seamlessly Mark Maunder
10:32 am Bug #55 (New): MCEVAL_SECTION
Add a MCEVAL_SECTION that is called at the end of the procedure section or user function that is wrapped in if(mceval... Mark Maunder
08:39 am Revision 343: Use the term GCC instead of MinGW in README.txt
Arni Magnusson
05:40 pm Bug #54 (Closed): ludcmp_inv incorrect fix use dave suggested fix.
Johnoel Ancheta

03/19/2012

12:13 pm Support #53 (Closed): Support Clang
Johnoel Ancheta
08:16 pm Revision 342: n2mvol: don't do hess.
Johnoel Ancheta

03/18/2012

03:40 pm Revision 341: Fix whitespace etc in MinGW makefile tree
Arni Magnusson
03:31 pm Revision 340: Add 'mingw-clean' target to root Makefile
Arni Magnusson
12:50 pm Revision 339: Fix whitespace etc in README.txt
Arni Magnusson
10:31 am Revision 338: Fix build for solaris studio.
Johnoel Ancheta
10:13 am Revision 337: text editing in readme.txt.
Chris Grandin
10:03 am Revision 336: Git rid of unzip bullet in MSYS description
Chris Grandin
09:53 am Revision 335: Updated build description for using MSYS for Windows.
Chris Grandin
09:24 am Revision 334: Fix safe builds for contrib libraries.
Chris Grandin
12:51 am Revision 333: Should not have CR LF line endings.
Johnoel Ancheta

03/17/2012

02:26 pm Revision 332: mingw.mak: simplify dirnames, use ${COMP} instead of g++, clean properly
Arni Magnusson
12:58 pm Revision 331: Fix whitespace etc in mingw.mak - no changes in functionality
Arni Magnusson
11:52 am Bug #51: _CONST change to const
The use of the const keyword in ADMB is a legacy of the evolution of C++ during the early development of the AUTODIF ... John Sibert
10:59 am Revision 330: Really fix solaris studio build.
Johnoel Ancheta
03:19 am Revision 329: Fix solaris studio build.
Johnoel Ancheta
02:26 am Revision 328: dos2unix it.
Johnoel Ancheta
06:46 pm Revision 327: +3 vectorized versions of pow function, need to remove from contrib/
Mollie Brooks
06:18 pm Bug #52 (Closed): Remove old sed.exe and sed1.exe
Johnoel Ancheta
06:15 pm Revision 326: fix contrib link problem
Weihai Liu
05:29 pm Bug #51 (Closed): _CONST change to const
Johnoel Ancheta
05:22 pm Bug #50 (Closed): API documents page missing stuff
http://www.admb-project.org/documentation/api/group__BAD.html Johnoel Ancheta

03/16/2012

04:59 pm Revision 325: Copying of qfclib.h to build contrib directory and fixed safe builds for the user l...
Chris Grandin
04:59 pm Revision 324: reupload qfclib.h header file
Weihai Liu
04:52 pm Revision 323: Improve build instructions in utilities/ad2csv.cpp
Arni Magnusson
04:31 pm Revision 322: Remove stub target.
Johnoel Ancheta
04:31 pm Revision 321: Remove stub target.
Johnoel Ancheta
04:30 pm Revision 320: Remove stub target.
Johnoel Ancheta
04:20 pm Feature #49 (Closed): Create symbolic link to built admb folder
Johnoel Ancheta
02:24 pm Revision 319: Add build instructions to utilities/ad2csv.cpp
Arni Magnusson
01:45 pm Bug #48 (Closed): user contrib doxygen
statlib is the only user contributed library that shows the doxygen info here
http://admb-project.org/documentation/...
Mollie Brooks
01:44 pm Support #47 (Closed): Include valgrind in buildbot tasks
Johnoel Ancheta
01:43 pm Revision 318: ad2csv, a new tool in 'utilities' directory
Arni Magnusson
01:37 pm Support #31: README.txt
The README file is out of date in other ways.
Chris Grandin and Ian Taylor are happy to contribute to this as well.
Ian Taylor
01:32 pm Revision 317: Add 'utilities' directory with make.exe and flex.exe
Arni Magnusson
01:28 pm Revision 316: Upgrade sed.exe from version 2.05 to 3.02
Arni Magnusson
01:16 pm Revision 315: Added qfclib.h to contrib.h
Chris Grandin
01:10 pm Revision 314: fixed error in constructor for ragged i4arrays in
davef
12:55 pm Revision 313: Cleaned up various makefiles and added GNUmakefiles for user contributed libraries
Chris Grandin
12:54 pm Revision 312: Cleaned up various makefiles and added GNUmakefiles for user contributed libraries
Chris Grandin
12:42 pm Revision 311: Should copy qfclib.h to contrib.h
Johnoel Ancheta
12:27 pm Bug #46 (Closed): Add functions to qfclib.h
Johnoel Ancheta
12:21 pm Revision 310: Build scripts for all user contributed libraries now finished. Also Windows (adlin...
Chris Grandin
12:19 pm Feature #45 (Closed): Example for priors
Need an example for the priors feature. Johnoel Ancheta
12:02 pm Feature #44 (New): Include phase value in output file
Johnoel Ancheta
11:55 am Revision 309: Fix vc compiler build.
Johnoel Ancheta
11:45 am Revision 308: added corrected copy command to work for mingw.mak
Jim Ianelli
10:24 am Feature #12 (Resolved): char* get_name()
Revision 302 John Sibert
07:39 pm Feature #43 (Closed): stop supporting the Borland compiler to make our lives easier
Source code has a bunch of "if" statements to deal with differences between compilers.
Mark Maunder is assignee on t...
Ian Taylor
07:35 pm Revision 307: add header file
Weihai Liu
07:12 pm Revision 306: update user contribute lib
Weihai Liu
07:06 pm Revision 305: Added examples/contrib directory with two examples of using statsLib in simple.tpl ...
stevenmartell
07:04 pm Revision 304: Additions to the statsLib in the contrib directory
stevenmartell
06:32 pm Feature #11 (Resolved): value funtion for param_init_bounded_number_vector?
Revison 302 John Sibert
06:31 pm Revision 303: sum log det instead of product of det to check invertibility
Mollie Brooks
06:24 pm Revision 302: added
dvector value(const param_init_number_vector& t)
dvector value(const param_init_bounded_number_vector& t)
const char ...
John Sibert
06:02 pm Revision 301: add prior_section and likelihood_section
Weihai Liu
05:10 pm Feature #8 (Resolved): Open MPI
Merging code to the trunk will be done later when development has been improved a little more. Derek Seiple

03/15/2012

04:43 pm Feature #42 (New): faster inversion of Hessian matrix
Dave Fournier looked at some ways of speeding up the Hessian inversion, but didn't have them with him at the 2012 Dev... Ian Taylor
02:18 pm Feature #41 (Closed): Add condition for older version of MinGW and Win XP in configure file
Change line 4045 from
if (test "`uname -s`" = "MINGW32_NT-6.1") || (test "`uname -s`" = "MINGW32_NT-5.2")
...
Teresa A'mar
02:14 pm Feature #40 (Closed): Output unsorted and sorted eigenvalues in file [model].eva
Update nh99/mod_hess.cpp to output the unsorted and sorted eigenvalues, e.g.,
(diff output)
608c608
< dv...
Teresa A'mar
01:34 pm Support #39: documents for Mac users
Steve's solution is better:
In Terminal, go to Preferences, Settings, then click the tab for Shell. Under Startup, ...
Mollie Brooks
01:14 pm Support #39 (Closed): documents for Mac users
We need to document somewhere that mac users using the Terminal command window need to type bash before the terminal ... Mollie Brooks
01:04 pm Bug #38 (Closed): contrib not working with vc.mak
Contributed libraries not working when compiling for Visual C++ Ian Taylor
09:49 am Revision 300: Revert copies, don't do hess for orange_cor.
Johnoel Ancheta
12:48 am Bug #37 (Closed): problem in df1b2fun.h
Chris Gast writes "After changing line 1978 in df1b2fun.h to match the correct function header on line 220 of df1b2l... Ian Taylor
12:40 am Feature #36 (New): continue development of factors in ADMB
Anders has made good progress with the new support for factors. Continued expansion of his work for options like phas... Ian Taylor
12:33 am Feature #35 (Closed): out of date User Manual
If there's a chapter in the User Manual called "All the Functions in AD Model Builder", it should describe a lot more... Ian Taylor
11:38 pm Revision 299: Revert to original simple.tpl.
Johnoel Ancheta
07:11 pm Feature #34 (Closed): Debugging symbols in distributions
Johnoel Ancheta
07:08 pm Feature #33 (Closed): MD for debugging help
Johnoel Ancheta
06:53 pm Revision 298: Fix whitespace
Arni Magnusson
06:52 pm Revision 297: Resurrect mingw.mak to build ADMB for Windows w/minimal dependencies
Arni Magnusson
05:54 pm Revision 296: Remove the copying of source files to build directory. Users shouldn't see source ...
Chris Grandin
05:34 pm Bug #32 (Closed): out of date documentation
Delete the instructions here
http://code.google.com/p/admb-project/source/checkout
Mollie Brooks
05:27 pm Revision 295: Changes to the config file to allow the contrib directory to be created and populat...
stevenmartell

03/14/2012

04:54 pm Revision 294: Add contrib library path.
Johnoel Ancheta
01:55 pm Revision 293: Make all target now makes contrib libraries as well as the core code.
Chris Grandin
11:37 am Revision 292: Added support for linking user contributed libraries.
Chris Grandin
12:01 am Revision 291: Try Id again.....
Johnoel Ancheta
07:24 pm Revision 290: Test file for Id.
Johnoel Ancheta
07:23 pm Revision 289: Really put svn:keyword Id...
Johnoel Ancheta
07:15 pm Revision 288: Get Id working.
Johnoel Ancheta
07:07 pm Revision 287: Add svn 'Id'.
Johnoel Ancheta
06:37 pm Support #31 (Closed): README.txt
(1) At some point this file instructed Mac users to follow instructions for UNIX and g++; this isn't in the recent ve... Mollie Brooks

03/13/2012

04:17 pm Revision 286: Better description of contrib/qfclib
Arni Magnusson
03:08 pm Revision 285: Add readme.txt for contrib directory
Arni Magnusson
12:11 pm Revision 284: Added proper citation for How to Cite ADMB and URL in the ReadMe file.
stevenmartell

03/11/2012

11:09 am Revision 283: [Issue #30] Orange cor should work now...
Johnoel Ancheta
11:18 pm Bug #22 (Closed): Use Gentoo patches
Johnoel Ancheta

03/10/2012

12:04 am Revision 282: Apply debian patches.
Johnoel Ancheta

03/09/2012

03:30 pm Revision 281: Fix broken build.
Johnoel Ancheta
02:05 pm Bug #30 (Closed): No Hessian errors or negative eigen values but SD report not created
Resolved revision 280.
The issue was with computing the determinant to check if the matrix was singular.
Accordin...
Johnoel Ancheta
02:04 pm Revision 280: [Issue #30] Don't compute determinant instead check for zeros in the diagnoal.
Johnoel Ancheta
01:57 pm Revision 279: factors modified
andersn
10:11 am Revision 278: Fix broken build, don't default initialize in two places.
Johnoel Ancheta
11:35 pm Revision 277: Fix broken solaris studio build.
Johnoel Ancheta
06:01 pm Revision 276: started support for factors with cpp file
andersn
05:32 pm Revision 275: started support for factors
andersn
05:14 pm Revision 274: Use correct output folder.
Johnoel Ancheta

03/08/2012

01:04 pm Revision 273: Nevermind don't include trunk. Silly idea...
Johnoel Ancheta
12:02 pm Revision 272: Typo...
Johnoel Ancheta
11:15 am Revision 271: Replace 10.1 with trunk for windows builds.
Johnoel Ancheta

03/06/2012

04:42 pm Revision 270: Fix broken build.
Johnoel Ancheta
04:06 pm Revision 269: Remove confusing 10.x version number
Johnoel Ancheta

03/02/2012

01:02 pm Revision 268: Re-add adlink and adcomp with correct permissions.
Derek Seiple
01:00 pm Revision 267: Remove adcomp and adlink. Will re-add them with correct permissions.
Derek Seiple

03/01/2012

09:44 am Revision 266: fix build for Open MPI
Derek Seiple
09:35 am Revision 265: Remove example documentation files that are redundant or not useful
Arni Magnusson
06:14 am Revision 264
Derek Seiple

02/29/2012

02:12 pm Revision 263: Merge from trunk -r 72:262 into branch
Derek Seiple
12:19 pm Bug #30: No Hessian errors or negative eigen values but SD report not created
Does not output .std file with the borland compiler. Vc10 and xcode do output the file. Johnoel Ancheta
11:10 am Revision 262: change to configure script, adcomp, adlink
Derek Seiple
10:30 am Revision 261: configure change
Derek Seiple
09:48 am Revision 260: configure change
Derek Seiple
09:48 am Revision 259: Minor improvements in adcomp/adlink/admb for Linux
Arni Magnusson
08:46 am Revision 258: configure change
Derek Seiple
08:11 am Revision 257: configure change
Derek Seiple
07:31 am Revision 256: configure change
Derek Seiple
06:52 am Revision 255: Change to adlink, adcomp
Derek Seiple
06:20 am Revision 254: Change to configure
Derek Seiple
05:34 am Revision 253: Change to configure and make file to work with more OSes
Derek Seiple
04:17 pm Bug #9 (Closed): ADMB in linux has problems with DOS line breaks
Johnoel Ancheta
04:16 pm Bug #6 (Closed): Fix build problems on older MacOS
Johnoel Ancheta
04:16 pm Feature #24 (Closed): Add code checkers to buildbot
Johnoel Ancheta
04:16 pm Feature #29 (Closed): Add parallel branch to buildbot
Done. Updated buildbot to include building branches. Johnoel Ancheta

02/28/2012

02:54 pm Revision 252: Just to test branches on buildbot.
Johnoel Ancheta
02:49 pm Revision 251: Just to test branches on buildbot.
Johnoel Ancheta

02/27/2012

10:43 am Bug #30 (Closed): No Hessian errors or negative eigen values but SD report not created
No Hessian errors or negative eigen values but SD report not created Mark Maunder
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