Activity

From 03/20/2012 to 04/18/2012

04/17/2012

09:39 am Revision 427: Fixed linking for contributed libraries
grandinc
08:32 am Revision 426: Another typo LICENSE -> LICENSE.txt in make install
grandinc
06:01 pm Revision 425: Another typo...
Johnoel Ancheta

04/16/2012

04:34 pm Revision 424: Use .txt for windows users.
Johnoel Ancheta
02:25 pm Revision 423: Fixed broken make install
grandinc

04/12/2012

04:02 pm Revision 422: Revert src back to r413 keeping changes in r420.
Johnoel Ancheta

04/11/2012

07:30 pm Revision 421: Dos to Linux line endings for more files
Arni Magnusson
07:12 pm Revision 420: Replace Latin-1 characters with ASCII
Arni Magnusson
07:01 pm Revision 419: Replace Unicode characters with ASCII
Arni Magnusson

04/10/2012

04:36 pm Revision 418: Revert r414 conversion of URLs, from http:// url back to http://url
Arni Magnusson
04:27 pm Revision 417: Reverted conversion of line endings from r414, back to Linux style
Arni Magnusson
12:31 pm Revision 416: Added "checkstyle" target to call google style checker.
Johnoel Ancheta
12:22 pm Revision 415: Add google cpplint for style checking.
Johnoel Ancheta
09:35 am Revision 414: Changed almost all CPP HPP and H files to reduce warnings from Ubuntu build involvi...
Chris Grandin

04/09/2012

12:13 pm Revision 413: Fix bug in -help, where model name was truncated
Arni Magnusson
12:11 pm Revision 412: Fix whitespace etc. in src/nh99/model7.cpp
Arni Magnusson

04/06/2012

12:10 pm Revision 411: Add NEWS template
Arni Magnusson
09:52 am Revision 410: Correct bibliography in ADMB-RE manual
Arni Magnusson
09:51 am Revision 409: Change "ADMB Foundation Core Development Team" to "ADMB Core Team"
Arni Magnusson
09:41 am Revision 408: Improve -help and -info, add support for --version
Arni Magnusson
07:02 am Revision 407: Fix whitespace etc. in src/nh99/model7.cpp
Arni Magnusson

04/04/2012

02:39 pm Feature #102 (Closed): ad2csv in 'bin' directory
There is a new feature that ADMB 11.0 users might appreciate: the ad2csv
program to read the contents of .cov, .hes,...
Arni Magnusson
02:38 pm Support #101 (Closed): Have mingw.mak build the 'contrib' component of ADMB
Arni Magnusson
05:45 am Feature #100 (In Progress): Extend paralellization to RE banded hessian
Derek Seiple
05:44 am Feature #70 (In Progress): MPI on multiple cores
Derek Seiple
05:41 am Feature #100 (Closed): Extend paralellization to RE banded hessian
Derek Seiple
12:41 am Revision 406: Remove ununsed borland batch files.
Johnoel Ancheta
06:06 pm Bug #1: ADMB 10.1 MinGW missing dat files
Also missing sed.exe Arni Magnusson

04/03/2012

04:41 pm Revision 405: Use version number for mingw.
Johnoel Ancheta
04:00 pm Feature #96 (Closed): Create announce email.
Thanks Nick. Johnoel Ancheta
03:34 pm Feature #99 (Closed): support 64 bit Windows GCC
64 bit GCC for Windows is available at http://admb-project.org/community/related-software/gcc Ian Taylor
02:55 pm Revision 404: added labels to cout statement in hybrid mcmc
Ian Taylor
02:20 pm Revision 403: More work on the Windows Visual C++ procedures. README.txt changed only.
Chris Grandin
02:04 pm Feature #80: Including contributed functions with build
I need to modify the LEX script to do this. Haven't yet had time for it, for now the user must put the include in th... Chris Grandin
02:02 pm Support #62: Windows building from source
The build steps for Visual Studio now work seamlessly, as long as the install procedures in the following link are fo... Chris Grandin
02:00 pm Support #58: Windows installation
The Visual studio installs for 32-bit and 64-bit should now work correctly. I have updated the VS install procedures... Chris Grandin
01:53 pm Bug #38: contrib not working with vc.mak
This is working fine now. It has been tested on Windows XP, Windows XP 64, and Windows 7. Chris Grandin
01:48 pm Revision 402: Really, REALLY fix the dmg path problem...
Johnoel Ancheta
01:38 pm Feature #71 (Closed): Priors section
Weihai Liu
01:37 pm Feature #92: Developers workshop report
most input received. Jim Ianelli
01:31 pm Revision 401: add examples for prior_section testing
Weihai Liu
01:26 pm Support #66: SVN and contribution technical tutorial
building from source is now better documented in README. I'm not aware of progress on the other stuff, but still thin... Ian Taylor
01:23 pm Support #59: Installation Documentation
Additional revisions made.
Chris Grandin has kindly rewritten the MSVC install guide.
Ian Taylor
01:22 pm Revision 400: update for prior_section example
Weihai Liu
01:18 pm Revision 399: Should deallocate memory reported by cppcheck.
Johnoel Ancheta
12:49 pm Revision 398: Fix dmg script with correct path.
Johnoel Ancheta
12:37 pm Support #67 (Resolved): IDE debugger manual
Page 12 in IDE manual. Arni Magnusson
12:36 pm Support #68 (In Progress): Coding standards manual
Matthew Supernaw
12:36 pm Support #60: IDE building source
Johnoel, can you please add 'contrib' to the mingw.mak file?
Thanks,
Arni
Arni Magnusson
12:35 pm Support #56 (Resolved): IDE installation
Arni Magnusson
12:34 pm Bug #52 (Resolved): Remove old sed.exe and sed1.exe
Arni Magnusson
12:10 pm Support #79: Reorganise and catalog contributed functions
Nothing done on this yet Mark Maunder
12:10 pm Support #69: Redmine, assigning tasks and nagging
Teresa did some the nagging for me Mark Maunder
12:06 pm Feature #43: stop supporting the Borland compiler to make our lives easier
A decision has been made to stop supporting the Borland compiler. Developers and users have been notified. Mark Maunder
11:54 am Feature #71 (In Progress): Priors section
Weihai Liu
11:53 am Revision 397: Fix path for dmg script.
Johnoel Ancheta
11:52 am Feature #45 (Closed): Example for priors
Weihai Liu
11:46 am Bug #46 (Closed): Add functions to qfclib.h
Weihai Liu
10:28 am Revision 396: Create 'scripts/ide' containing ADMB-IDE files: .emacs, manual, build
Arni Magnusson
09:45 am Revision 395: Fix path problem.
Johnoel Ancheta
01:05 am Revision 394: Simplify build folders. Sorry anders...another change.
Johnoel Ancheta
05:30 pm Revision 393: Fix borland build.
Johnoel Ancheta

04/02/2012

04:12 pm Revision 392: Fix intel build.
Johnoel Ancheta
03:54 pm Revision 391: Fix solaris studio build for istringstream.
Johnoel Ancheta
11:52 am Revision 390: Changed setup scripts for Windows to default install in C:\ADMB instead of 'Program...
Chris Grandin
11:27 am Revision 389: Cleanup in linux.mak, no changes in functionality
Arni Magnusson
02:24 am Revision 388: Fix solaris studio build.
Johnoel Ancheta
12:57 am Revision 387: Removed no-deprecated and permissive flags, then changed deprecated headers with re...
Johnoel Ancheta

03/31/2012

05:49 pm Revision 386: Add new line character because Solaris Studio says so...
Johnoel Ancheta

03/30/2012

02:31 pm Revision 385: Don't use -fpremissive with solaris studio.
Johnoel Ancheta
01:56 pm Bug #97 (Closed): tpl2cpp in precompiled binary fails in 32 bit linux
Now works fine thanks to quick fix by Johnoel. Ian Taylor
01:45 pm Revision 384: Edited README.txt. Complete start-to-finish instructions on setting up 32 and 64-b...
Chris Grandin
01:14 pm Revision 383: Get rid of another meaningless const.
Johnoel Ancheta
12:53 pm Revision 382: Fix broken build.
Johnoel Ancheta
12:03 pm Revision 381: Remove meaningless const warning from intel compiler.
Johnoel Ancheta
10:14 am Revision 380: Fix intel compiler warnings for meaningless const types.
Johnoel Ancheta
02:42 am Bug #97 (Feedback): tpl2cpp in precompiled binary fails in 32 bit linux
Fixed in Revision 378. Johnoel Ancheta
12:22 am Revision 379: Fix makefile witch cxxflags.
Johnoel Ancheta
11:55 pm Revision 378: [Issue #97] Should also set CFLAGS for 32 bit builds.
Johnoel Ancheta
05:14 pm Support #53 (Closed): Support Clang
Runs on buildbot and creates snaphots. Johnoel Ancheta

03/29/2012

03:07 pm Feature #98 (New): Cumulative distributions for probability functions
Cumulative distributions should be created for all possible probability functions Mark Maunder
12:19 am Revision 377: Should not input less than zero for log.
Johnoel Ancheta
06:30 pm Revision 376: Should not allow negatives in log function.
Johnoel Ancheta

03/28/2012

01:45 pm Revision 375: Minor text errors in README.txt
Chris Grandin
01:37 pm Revision 374: Got rid of MSSDK requirements in README.txt.
Chris Grandin
01:37 pm Revision 373: Got rid of MSSDK requirement in adcomp.bat. User instructions are to use Windows A...
Chris Grandin
01:36 pm Revision 372: Got rid of MSSDK requirement in adlink.bat. User instructions are to use Windows A...
Chris Grandin
12:42 pm Revision 371: Got rid of MSYS build method - way to confusing!! Added the source build and insta...
Chris Grandin

03/27/2012

04:16 pm Revision 370: expanded README section on Binary Distributions
Ian Taylor
01:44 pm Support #63: Building from source documentation
Arni and Johnoel have been doing most of the work on updating README.txt. Currently website points to this file, but ... Ian Taylor
01:42 pm Support #59: Installation Documentation
some installation pages on website updated, email sent requesting feedback Ian Taylor
01:41 pm Bug #97 (Closed): tpl2cpp in precompiled binary fails in 32 bit linux
I tried installing both the 10.1 binary and a recent snapshot on 32 bit linux (Ubuntu 11.10).
Both gave me a warning...
Ian Taylor
04:27 am Revision 369: Remove 'Borland' section from README.txt, not supported in next release
Arni Magnusson
04:25 am Revision 368: Simplify names of compilers and platforms in README.txt
Arni Magnusson

03/26/2012

02:34 pm Revision 367: Readd Intel compiler installation procedures.
Johnoel Ancheta
11:32 am Revision 366: Add support for simple --help with two hyphens
Arni Magnusson
09:49 am Revision 365: Simplify "MS Windows" -> "Windows" in README.txt
Arni Magnusson
01:44 am Revision 364: Fix warnings about unused variables.
Johnoel Ancheta

03/25/2012

11:57 pm Revision 363: Fix broken build for solaris studio.
Johnoel Ancheta
11:44 pm Revision 362: Fix g++ compiler warnings.
Johnoel Ancheta
11:41 pm Revision 361: Fix some g++ compiler warnings.
Johnoel Ancheta

03/24/2012

02:12 am Revision 360: Fix reported cppcheck error for allocation and deallocation of memory.
Johnoel Ancheta
07:49 pm Revision 359: Use 'md' instead of 'mkdir' in Windows makefiles (don't use coreutils)
Arni Magnusson
06:10 pm Feature #96 (Closed): Create announce email.
Johnoel Ancheta

03/22/2012

03:50 pm Revision 358: fixed line with more than 80 characters
ian
03:41 pm Revision 357: added new set_GRADSTACK_BUFFER_BYTES which has units in bytes just like -gbs
ian
01:51 pm Bug #90: memory allocation settings
current settings found in trunk/src/linad99/gradstrc.cpp
survey email sent to users list
Ian Taylor
01:49 pm Feature #95 (New): Show penalties to the objective function caused by bounded params
It would be a nice feature, if all penalties added to the objective function due to bounded parameters getting close ... Casper Berg
12:36 pm Revision 356: Since clang only 3.0 builds admb.
Johnoel Ancheta
11:35 am Feature #94 (In Progress): implement and document mcmc options
There are a variety of mcmc-related options that aren't fully implemented.
The mcsave option isn't implemented fo...
Ian Taylor
11:31 pm Feature #11 (Closed): value funtion for param_init_bounded_number_vector?
John Sibert
11:30 pm Feature #12 (Closed): char* get_name()
John Sibert
11:29 pm Feature #26 (Closed): = operator for adstring_array
John Sibert
11:13 pm Revision 355: Fix broken build for solaris studio.
Johnoel Ancheta
11:01 pm Revision 354: Use 'rd' instead of 'rmdir' in Windows makefiles (don't use coreutils)
Arni Magnusson
10:05 pm Revision 353: Don't copy sedflex to 'bin' directory
Arni Magnusson
09:17 pm Revision 352: Remove sed* files from scripts/g++, current ones in src/df1b2-separable
Arni Magnusson
08:35 pm Revision 351: Remove sedcmd* files, not used anywhere
Arni Magnusson
08:26 pm Revision 350: Remove sed1.exe from original-refcard.tex
Arni Magnusson
07:28 pm Revision 349: Added option to stop optimizing after pressing Ctrl-C
Casper Berg

03/21/2012

04:11 pm Support #53 (Resolved): Support Clang
Initial clang port in revision #348. Awaiting the buildbot and others... Johnoel Ancheta
04:07 pm Revision 348: [Issue #53] Ported with clang compiler.
Johnoel Ancheta
12:15 pm Revision 347: Delete remnants of 'stub' library from linux.mak and mingw.mak
Arni Magnusson
10:06 am Revision 346: Remove sed1.exe line from linux.mak
Arni Magnusson
10:00 am Revision 345: Remove sed1.exe
Arni Magnusson
09:02 am Revision 344: Fix whitespace etc in makefiles
Arni Magnusson

03/20/2012

02:58 pm Support #58: Windows installation
Ok, answer my own question.. Found the innosetup folder. I will work from those scripts. Johnoel if there are any ... Chris Grandin
02:46 pm Support #58: Windows installation
I'm trying to find out how the Windows 7 install exe is created. It looks like an *innosetup* project but who has th... Chris Grandin
11:35 am Support #93 (Closed): Valgrind tutorial
Write a Valgrind tutorial Mark Maunder
11:34 am Feature #92 (Closed): Developers workshop report
Write the developers workshop report Mark Maunder
11:33 am Feature #91 (New): Profile likelihood
Revisit the profile likelihood code to 1) extend it to RE models, 2) optionally change the method to augmented Lagran... Mark Maunder
11:33 am Bug #90 (Closed): memory allocation settings
Decide which memory allocation settings should have larger defaults Mark Maunder
11:32 am Bug #89 (In Progress): 64 bit version
Make sure the 64 bit versions work
Chnage long to longlong
Mark Maunder
11:31 am Support #88 (Closed): Example of how to change glmmadmb
Example how to take GLMMADMB and change it
This can be used in Courses
Mark Maunder
11:30 am Support #87 (Closed): glmmADMB Catalog of examples
Mark Maunder
11:30 am Bug #74: Solve function
Summing log of diagonal
When using Numerical recipes version need to maintain pivoting stuff in the current version
Mark Maunder
11:28 am Feature #86 (New): Amalgamation of tpl2cpp and tpl2rem
Amalgamation of tpl2cpp and tpl2rem. Make them one piece of code that share common code Mark Maunder
11:27 am Feature #85 (In Progress): Make functions to print out objects in debugging
Make functions to print out objects in debugging
Get these from MULTIFAN-CL
Mark Maunder
11:27 am Feature #84 (Closed): debug version of binaries
Should have a debug and no optimization version available for every compiler version Mark Maunder
11:26 am Support #83 (Closed): Protocol for providing errors to Dave (ADMB-GLMM)
Protocol for providing errors to Dave (ADMB-GLMM) Mark Maunder
11:25 am Feature #82 (New): Efficient robust minimizer that uses gradient and hessian in inner minimization
Efficient robust minimizer that uses gradient and hessian in inner minimization.
Make RE more robust
Mark Maunder
11:24 am Bug #81 (New): Automatically use Noinit when problematic convergence in ADMBre
Automatically use Noinit when problematic convergence in ADMBre Mark Maunder
11:23 am Feature #80 (Closed): Including contributed functions with build
Including contributed functions with build Chris Mark Maunder
11:22 am Support #79 (Closed): Reorganise and catalog contributed functions
reorganise and Catalog of contributed functions Mark Maunder
11:21 am Support #78 (Closed): Manual on how to use contributed functions
Write a manual on how to use contributed functions Molie/Steve Mark Maunder
11:21 am Support #77 (Closed): Tutorial on how to write contributed functions
How to write contributed functions
Basics Steve
Templates Mollie
Mark Maunder
11:20 am Support #76 (Closed): Website
Redesign the website
Mollie/Allan
Mark Maunder
11:19 am Support #75 (New): Ecological Examples
Put the ecological examples on the website Mark Maunder
11:18 am Bug #74 (Closed): Solve function
Fix the underflow error and rinstate the old version as an option Mark Maunder
11:17 am Bug #73 (New): -ilmn gradient
Fix the -ilmn gradient Mark Maunder
11:17 am Feature #72 (New): Spatial-temporal modeling
Add features to ADMB that facilitate Spatial-temporal modeling.
Hand and Anders
Mark Maunder
11:16 am Feature #71 (Closed): Priors section
Create verify and support the Priors section. Add examples to buildbot Mark Maunder
11:15 am Feature #70 (Closed): MPI on multiple cores
Implement and evaluate MPI on multiple cores
Derek/Teresa/Anders/Yukio
Mark Maunder
11:14 am Support #69 (Closed): Redmine, assigning tasks and nagging
Redmine, assigning tasks and nagging Mark Maunder
11:13 am Support #66: SVN and contribution technical tutorial
Ian Taylor to assist Mark Maunder
11:13 am Support #68 (Closed): Coding standards manual
Develop a coding standards manual
Johnoel and Matthew
Mark Maunder
11:12 am Support #67 (Closed): IDE debugger manual
Using debugger in IDE manual Mark Maunder
11:11 am Support #66 (Closed): SVN and contribution technical tutorial
SVN technical tutorial
Using SVN, building source, making changes, committing changes
Mark Maunder
11:09 am Support #65 (Closed): Doxygen documentation style guide
Develop a Doxygen documentation style guide
Mark Maunder
11:07 am Support #64 (Closed): Documentation: overall coordination and advice
Overall coordination and advice of documentation generation
Mark Maunder
11:05 am Support #63 (Closed): Building from source documentation
Ensure that the building from source documentation is corect and up to date
Mark Maunder
11:05 am Support #62 (Closed): Windows building from source
Ensure that building from source for windows works seamlessly
Mark Maunder
11:03 am Support #61 (Closed): Mac/Unix building from source
Ensure that building from source for the Mac/Unix works seamlessly Mark Maunder
11:02 am Support #60 (Closed): IDE building source
Ensure that building from source for the IDE works seamlessly Mark Maunder
11:00 am Support #59 (Closed): Installation Documentation
Ensure that the installation documentation is corect and up to date Mark Maunder
10:59 am Support #58 (Closed): Windows installation
Ensure that the installation for windows work seamlessly Mark Maunder
10:58 am Support #57 (Closed): Mac/Unix installation
Ensure that the installation for the Mac/Unix works seamlessly Mark Maunder
10:51 am Support #56 (Closed): IDE installation
Ensure that the installation for the IDE works seamlessly Mark Maunder
10:32 am Bug #55 (New): MCEVAL_SECTION
Add a MCEVAL_SECTION that is called at the end of the procedure section or user function that is wrapped in if(mceval... Mark Maunder
08:39 am Revision 343: Use the term GCC instead of MinGW in README.txt
Arni Magnusson
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