Added parallel-diff.txt. It shows what code has been changed during development.
Put all mpi examples in admb-mpi examples folder
Fix build errors
Fix build error introduced in last commit
merge trunk to branch -r 434:546
Parallelization work and other code improvements
parallelization of inner_optimization_banded function and sepbounds bug fix
reorganize block diagonal examples
accidently commited debug code
improved sync flag and temporary changes to ad_separable_manager
move block diagonal example
MPI example for block diagonal
Fixed MPI compile error
Fix error from merge
merge of trunk to branch revisions 263:433
mpi test program
Re-add adlink and adcomp with correct permissions.
Remove adcomp and adlink. Will re-add them with correct permissions.
fix build for Open MPI
Merge from trunk -r 72:262 into branch
change to configure script, adcomp, adlink
Change to adlink, adcomp
Change to configure
Change to configure and make file to work with more OSes
Just to test branches on buildbot.
Minor makefile chnage
Configure changes. Small change so hessian comp for non-RE works.
Forgot to add two files.
Changes to configure to work with Open MPI.
code clean up
Fix nested4 for parallel.
Added nested4 example.
Set output from master only.
RE Hessian and Covariance now correct. Output files now correct. Only minor changes to follow.
Improved separable model. RE now converges for multiple slaves.
consolidated mpi examples
Added another sparable example. Added code to coordinate convergance within get_uhat_quasi_newton_block_diagonal
slight change so hessian comp of non-RE models still works
made changes to the hessian for RE. Fixes hessian complaint for 2 slaves. Still doesn't converge for 2 slaves.
df1b2gradlist suffixes. non-RE gradient sync.
Changed name of separable_bounds class to ad_separable_manager. Improved so the bounds are calculated only once through the life of the program.
sycronized inner maxg amoung slaves and master. Slaves don't print inner maxg
Improvement to handling new separable_bounds class
First attempt at running separable model in parallel using Open MPI. Added test example in orange_mpi_test. Many changes to come.
changes to mod_hess.cpp and model7.cpp
change 81 to 101 cmpdif_file_name in fvar.hpp
clean compile on Dave's patches; errors in adcomp and catage example
Sandbox parallel development.
Update borland installer config.
Update vc build folder.
Fix borland 5.5 builds.
Be able to verify with different ADMB_HOME paths.
Add binary installation procedure for macos.
Really fix glmmadmb vc build.
Add fix for glmmadmb vc build contributed by Ben Bolker.
Update ADMB version control URL.
Add support for MinGW 5.2
Add glmmadmb to examples.
Workaround for Intel compiler, use safe code instead of opt for a few functions.
Update Intel build procedure and version number to 10.1.
Fix Intel build by adding another character type to adstring::operator+.
fixed small typo in README.txt
Add place for user contributed files.
added dox for dvariable and related classes
Replace 'std dev' with 'std.dev' in manuals and examples
Write out 'std.dev' instead of 'std dev' in *.cor and *.std files
Define 'sumsq' as alias of 'norm2'
Added matrix exponential for df1b2matrix
dmatrix version of matrix exponential expm
fix PI compile error in cgamdev.cpp
documented negative binomial density functions
Replace 3.14159* with PI everywhere
Define PI (and M_PI) in fvar.hpp
changes to Doxyfile and dox Makefile
Fix warnings in tpl2cpp.lex and tpl2rem.lex
undo of revision 37
Simplify and comment CXXFLAGS and LDFLAGS in adcomp, adlink, and admb
Remove old scripts.
Remove unused file.
Fix scripts to pass CXXFLAGS and LDFLAGS to adcomp and adlink.
Add missing step in README.txt.
removed duplicate gammln function. prevariable version instead of dvariable version.
Don't force build hs_sparse.cpp.
Add Mollie Brooks suggestion for MacOS users.