df1b2 versions of dbiniom, +dnbinom_tau, revert dnbinom
Overloaded init_bounded_number in tpl2lexx, admodel.h, and main.cpp to accept a vector defining minb, maxb, and phase of estimation to reduce the amount of user code for control files.
Corrected a few minor bugs with unused expressions due to extra semicolon in df3fun.cpp
Fixed bug 129, taking the determinant of a dvar_matrix with a lower bound > 1, array out of bounds error
Minor change to statsLib.h to remove prototypes for template functions that caused linker errors when comipling tpls.
Added template function for plogis so it works with df1b2variables
Use correct path.
Fixes for cl.
Move redundant rules to a single file.
Big changes to the GNU make build files. Enable parallel builds, documentation and minimize unnessary tasks for building ADMB.
Rework contrib build files.
* User interface: Windows admb bash script has a .sh extension to avoid conflict with batch file. So in MinGW or Cygwin shell, user will need+ to use + + [~/admb/examples/admb/simple/]$ ~/admb/admb.sh simple
Revert some changes from previous revision.
Fixes for mingw builds.
Fixes and cleanups with main and contributed build files.
Fixed an error in the doxygen documenation for the dgamma function
Fixed reference to _Ios_Openmode in ufstream.cpp and cifstrem.cpp that created compiling problems on OXS 10.9 (Mavericks)
Fix, must copy contrib include files to contrib/include.
Update build files for VC
Major changes to the gmake build files to simplify and improve.To use just type
Or for Visual C++
in the main source directory.
Added omitted dbinom functions to statsLib.h
vectorized versions of dbinom in statsLib (request from Bolker)
Reparameterization of the negative binomial in contrib/statsLib/dnbinom.cpp
clarified description of dzinbinom
Try include it.
deleted commented out lines in dnbinom.cpp
added dnbinom and dzinbinom to statslib.h and doxygen
clean up and ad dox to fvar.hpp; fix dox for contrib
Fixed documentation for poisson distribution in statsLib/dpois.cpp
Added student's t distribution to contrib/statsLib
[Issue #101] mingw.mak builds contrib libraries by default.
Replace Latin-1 characters with ASCII
Should not have CR LF line endings.
Cleaned up various makefiles and added GNUmakefiles for user contributed libraries
Build scripts for all user contributed libraries now finished. Also Windows (adlink.bat and adcomp.bat) modified to link to these libraries.
Additions to the statsLib in the contrib directory
Changes to the config file to allow the contrib directory to be created and populated in make install on the mac
Added proper citation for How to Cite ADMB and URL in the ReadMe file.
Opps forgot to clean statslib.
Combined dnbinom.cpp and dnbinom_eco.cpp, all now named dnbinom. Added dzinbinom.cpp zero inflated negative binomial negative log likelihood.
fix latex error in dox for dnorm.cpp and dlnorm.cpp
Fixed statsLib.h so that it contains the function and class declarations for the implemented functions. Removed redundant #include statements. Added some functions including vcubic_spline, dunif, dinvgamma, dmvlogistic, eplogis, mutifan, and rmvlogistic. Created makefiles for g++ and Visual studio (cl) compilers. These have both been tested on Windows. g++ works through mingw comand shell and cl works through the Visual studio command prompt. Still need to get dbinom_eco and dbinom_eco_zi working.
Added build files for contributed libraries.To use:$ make --directory=scripts/configure$ ./configure$ make$ make contrib
typo in dnbinom_eco
added dnbinom_ecoand dnbinom_eco_zi functions separate from dnbinom because they are parametarized differently, the parmetarization most often used by ecologists. _zi stands for zero inflated
removed vectorized and random effects versions
added vectorized and random effects versions of dnbinom
added vectorized versions to dgamma
Modified dnbinom.cpp due to potential bug that Mollie Brooks pointed out. THANKS MB!
Update to Doxyfile with help info for contrib/statslib
Contributed libraries from Steve Martell --directory contrib/statslib