Revision:

Revisions

# Date Author Comment
174 10/10/2011 08:06 am dseiple

Improvement to handling new separable_bounds class

173 10/07/2011 08:33 am dseiple

First attempt at running separable model in parallel using Open MPI. Added test example in orange_mpi_test. Many changes to come.

172 10/04/2011 03:26 pm johnoel

Add Intel workarounds.

171 10/04/2011 03:08 pm johnoel

Correct path.

170 10/04/2011 02:37 pm dseiple

The 3 beta examples didn't get added

169 10/04/2011 02:15 pm dseiple

More fixes for betai and incbet. 3 examples added to test folder.

168 10/03/2011 05:13 pm johnoel

Add CXXFLAGS and LDFLAGS to script.

167 10/01/2011 04:39 pm jsibert

added dox for mfexp()

166 09/30/2011 07:17 pm johnoel

Fix errors 10.1

165 09/30/2011 04:18 pm johnoel

Fix typo in 10.1

164 09/30/2011 03:58 pm johnoel

Fix solaris 10.1 build.

163 09/30/2011 02:13 pm johnoel

Fix 10.1 compile problems.

162 09/29/2011 06:22 pm johnoel

Fixes to Windows and Borland compilers.

161 09/28/2011 06:01 pm johnoel

Add ADMB Foundation to Copyright and add -version to -help option.

160 09/28/2011 05:43 pm johnoel

Fix buildbot exception for borland runtime.

159 09/28/2011 03:45 pm johnoel

--version touch ups.

158 09/28/2011 01:15 pm johnoel

Allow all examples for borland verify.

157 09/28/2011 01:15 pm johnoel

Add revision to --version

156 09/27/2011 05:04 pm johnoel

Add line space

155 09/27/2011 04:08 pm johnoel

Add copyright to -version.

154 09/27/2011 11:33 am johnoel

Fix broken build.

153 09/26/2011 05:23 pm johnoel

Don't hardcode version.

152 09/26/2011 04:59 pm johnoel

Add initial -version option.

151 09/26/2011 03:12 pm dseiple

gamma error on solaris

150 09/26/2011 02:55 pm dseiple

change truncreg.tpl back

149 09/23/2011 07:29 pm dseiple

fixed problem with betai and incbet

148 09/22/2011 03:40 pm johnoel

Revert to 127

147 09/21/2011 06:52 pm johnoel

Revert tpl2cpp.lex to revision 127.

146 09/16/2011 12:47 pm johnoel

Should put installer in root directory.

145 09/14/2011 03:32 pm johnoel

Fix nbmm for mingw build.

144 09/14/2011 12:59 pm johnoel

Hard correct path.

143 09/12/2011 02:52 pm johnoel

Port to mingw.

142 09/12/2011 12:17 pm johnoel

Ignore errors from admb-9.x

141 09/11/2011 01:18 pm johnoel

Ignore some runs for admb-9.x

140 09/09/2011 07:10 pm johnoel

Fix admb9 build for bvprobit.

139 09/09/2011 05:58 pm johnoel

Ignore forest errors because of admb-9.

138 09/09/2011 02:12 pm johnoel

Fix forest example issue.

137 09/09/2011 12:09 pm johnoel

Correct file paths and should not ignore errors.

136 09/02/2011 07:26 pm johnoel

Allow more vc examples.

135 08/29/2011 04:43 pm johnoel

Fix broken glmmadmb builds.

134 08/26/2011 05:50 pm johnoel

Add missing parameter.

133 08/24/2011 06:15 pm johnoel

Update glmmadmb

132 08/18/2011 02:51 pm johnoel

Add priors test examples.

131 08/15/2011 06:07 pm johnoel

Remove old unused mingw build files.

130 08/15/2011 04:51 pm johnoel

Remove unused sunstudio build file.

129 08/15/2011 01:33 pm johnoel

Remove unused icc makefile.

128 08/15/2011 06:24 am liuweih

add PRIORS_SECTION, LIKELIHOODS_SECTION for regular admb and admb RE, also add current_feval() for Mollie's request Feature#10

127 08/12/2011 06:06 pm johnoel

Fix union, logistic and caest examples for the macos-32bit.

126 08/11/2011 01:02 pm liuweih

add priors_section for random effect on priors branch for testing

125 08/08/2011 06:28 pm jianelli

Fixes commandline behavior in windows shell.

124 08/08/2011 06:01 pm jianelli
123 08/05/2011 06:04 pm johnoel

Add license to contrib header.

122 08/05/2011 04:32 pm johnoel

Remove binomial_w2 from benchmarks outputs.

121 08/05/2011 01:10 pm johnoel

Ignore union errors for now.

120 08/03/2011 04:53 pm johnoel

Fix typo.

119 08/03/2011 02:08 pm johnoel

Use M_PI instead of PI.

118 08/03/2011 01:50 pm johnoel

Create ecolib.h header and included them in source files that were missing the functions.

117 08/03/2011 01:28 pm johnoel

Allow nbmm to compile for unix.

116 08/02/2011 05:51 pm johnoel

Added build files for contributed libraries.
To use:
$ make --directory=scripts/configure
$ ./configure
$ make
$ make contrib

115 08/01/2011 04:56 pm mbrooks

typo in dnbinom_eco

114 08/01/2011 04:50 pm mbrooks

added dnbinom_ecoand dnbinom_eco_zi functions separate from dnbinom because they are parametarized differently, the parmetarization most often used by ecologists. _zi stands for zero inflated

113 08/01/2011 04:34 pm mbrooks

removed vectorized and random effects versions

112 08/01/2011 04:27 pm mbrooks

added vectorized and random effects versions of dnbinom

111 08/01/2011 03:40 pm mbrooks

added vectorized versions to dgamma

110 08/01/2011 01:29 pm johnoel

Should catch errors for union.

109 07/29/2011 06:42 pm johnoel

Opps...Fix broken builds from previous commit. Forgot to include header.

108 07/29/2011 04:07 pm johnoel

Fix union example segmentation problem.

107 07/29/2011 11:40 am stevenmartell

Modified dnbinom.cpp due to potential bug that Mollie Brooks pointed out. THANKS MB!

106 07/29/2011 12:56 am jsibert

changed qfc to QFC in Doxyfile

105 07/28/2011 11:02 am liuweih

overload likelihood functions for random effect, and change the format, the old one from VC++ editor looks not good in redmine.

104 07/28/2011 05:41 am liuweih

add two new files created by Dave for df1b2variable - double and its reverse form

103 07/27/2011 01:04 pm liuweih

user contribute library from weihai, some useful functions for doing simulation in admb and overloaded functions of negative log likelihood for some distributions

102 07/26/2011 03:41 pm johnoel

checkout from http should be readonly.

101 07/25/2011 07:41 pm johnoel

Add ecolib to doxygen config.

100 07/24/2011 08:47 pm cgrandin

Added likelihood wrapper source file like.cpp and included in priors.lib build

99 07/24/2011 08:19 pm cgrandin

Minor typos in makefiles

98 07/24/2011 02:34 pm cgrandin

This update adds the statslib library by Steve Martell. The functions in this library are used for PRIORS_SECTION and LIKELIHOOD_SECTION libraries.

97 07/24/2011 02:25 pm cgrandin

This update includes priorslib library code and makefile changes to implement PRIORS_SECTION.

96 07/24/2011 09:56 am mbrooks

added ecolib, including templates and tests

95 07/24/2011 09:29 am cgrandin

Lexer now scans PRIORS_SECTION and LIKELIHOOD_SECTION and allows C++ code in both. It also prepends 'prior_' or 'like_' to the function names after the 'disributed as' operator ~ for the respective sections. The functions will be included in the contrib directory as libraries which will be wrappers for the statslib library which is also in the contrib directory. The makefiles will be modified to link to these libraries. CG & WL

94 07/19/2011 02:34 pm jsibert

changes to dox for Weihai

93 07/19/2011 01:59 pm jsibert

added GNUMakefile(s)

92 07/18/2011 05:55 pm cgrandin

Scanner prior name (prior_name) and definition (prior_def) regular expressions now allow for whitespace around the tilde. Also a prior on a function call can now be defined, i.e. log(q) ~ dnorm(0,1). Also some changes by Weihai: "Most updates are in the define_prior, it allow users having any spaces around ~, and around their argument lists, I also setup the distribution mirror link there, not sure if that is the right way to go, which also need another user defined function see trim() at the end of file. See my attached rat example, which based on Mark's example converting winbugs to admb, first model on winbugs examples....

91 07/14/2011 04:26 pm stevenmartell

Update to Doxyfile with help info for contrib/statslib

90 07/14/2011 04:10 pm stevenmartell

Contributed libraries from Steve Martell --directory contrib/statslib

89 07/14/2011 03:50 pm stevenmartell

duplicate declaration of "double lgam(double x)" in df13tester.cpp and in cgamdev.cpp. Commented out lines 942-1049 in df13tester.cpp

88 07/14/2011 11:42 am jsibert

changes to mod_hess.cpp and model7.cpp

87 07/13/2011 01:32 pm dseiple

Removed duplicate double lgam(double) function from df13incbet.cpp

86 07/13/2011 10:43 am dseiple

Fix for lgam bug on the mac os. Removed duplicate symboles and consolidated to df11fun.* files. Removed df1fun.* files. Removed copy commands from the makefiles.

85 07/12/2011 06:36 pm jsibert

change 81 to 101 cmpdif_file_name in fvar.hpp

84 07/12/2011 05:58 pm jsibert

added contributed libraries to modules; streamlined INPUT section of Doxygile

83 07/12/2011 01:54 pm jsibert

clean compile on Dave's patches; errors in adcomp and catage example

82 07/12/2011 12:48 pm johnoel

Move glmmADMB folder because it conflicts with admb script.

81 07/12/2011 01:06 am cgrandin

Started adding library functions for PRIORS_SECTION. Also set up distribution library build objects for each platform. Added an example in the examples folder called simple-priors.

80 07/11/2011 07:35 pm cgrandin
79 07/11/2011 07:28 pm cgrandin

clean script for use while developing

78 07/11/2011 07:27 pm cgrandin

Remove hard coded paths

77 07/11/2011 05:42 pm cgrandin
76 07/11/2011 05:29 pm cgrandin
75 07/11/2011 03:48 pm johnoel

Sandbox GPU development.

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