Revision:

Revisions

# Date Author Comment
116 08/02/2011 05:51 pm johnoel

Added build files for contributed libraries.
To use:
$ make --directory=scripts/configure
$ ./configure
$ make
$ make contrib

115 08/01/2011 04:56 pm mbrooks

typo in dnbinom_eco

114 08/01/2011 04:50 pm mbrooks

added dnbinom_ecoand dnbinom_eco_zi functions separate from dnbinom because they are parametarized differently, the parmetarization most often used by ecologists. _zi stands for zero inflated

113 08/01/2011 04:34 pm mbrooks

removed vectorized and random effects versions

112 08/01/2011 04:27 pm mbrooks

added vectorized and random effects versions of dnbinom

111 08/01/2011 03:40 pm mbrooks

added vectorized versions to dgamma

110 08/01/2011 01:29 pm johnoel

Should catch errors for union.

109 07/29/2011 06:42 pm johnoel

Opps...Fix broken builds from previous commit. Forgot to include header.

108 07/29/2011 04:07 pm johnoel

Fix union example segmentation problem.

107 07/29/2011 11:40 am stevenmartell

Modified dnbinom.cpp due to potential bug that Mollie Brooks pointed out. THANKS MB!

106 07/29/2011 12:56 am jsibert

changed qfc to QFC in Doxyfile

105 07/28/2011 11:02 am liuweih

overload likelihood functions for random effect, and change the format, the old one from VC++ editor looks not good in redmine.

104 07/28/2011 05:41 am liuweih

add two new files created by Dave for df1b2variable - double and its reverse form

103 07/27/2011 01:04 pm liuweih

user contribute library from weihai, some useful functions for doing simulation in admb and overloaded functions of negative log likelihood for some distributions

102 07/26/2011 03:41 pm johnoel

checkout from http should be readonly.

101 07/25/2011 07:41 pm johnoel

Add ecolib to doxygen config.

100 07/24/2011 08:47 pm cgrandin

Added likelihood wrapper source file like.cpp and included in priors.lib build

99 07/24/2011 08:19 pm cgrandin

Minor typos in makefiles

98 07/24/2011 02:34 pm cgrandin

This update adds the statslib library by Steve Martell. The functions in this library are used for PRIORS_SECTION and LIKELIHOOD_SECTION libraries.

97 07/24/2011 02:25 pm cgrandin

This update includes priorslib library code and makefile changes to implement PRIORS_SECTION.

96 07/24/2011 09:56 am mbrooks

added ecolib, including templates and tests

95 07/24/2011 09:29 am cgrandin

Lexer now scans PRIORS_SECTION and LIKELIHOOD_SECTION and allows C++ code in both. It also prepends 'prior_' or 'like_' to the function names after the 'disributed as' operator ~ for the respective sections. The functions will be included in the contrib directory as libraries which will be wrappers for the statslib library which is also in the contrib directory. The makefiles will be modified to link to these libraries. CG & WL

94 07/19/2011 02:34 pm jsibert

changes to dox for Weihai

93 07/19/2011 01:59 pm jsibert

added GNUMakefile(s)

92 07/18/2011 05:55 pm cgrandin

Scanner prior name (prior_name) and definition (prior_def) regular expressions now allow for whitespace around the tilde. Also a prior on a function call can now be defined, i.e. log(q) ~ dnorm(0,1). Also some changes by Weihai: "Most updates are in the define_prior, it allow users having any spaces around ~, and around their argument lists, I also setup the distribution mirror link there, not sure if that is the right way to go, which also need another user defined function see trim() at the end of file. See my attached rat example, which based on Mark's example converting winbugs to admb, first model on winbugs examples....

91 07/14/2011 04:26 pm stevenmartell

Update to Doxyfile with help info for contrib/statslib

90 07/14/2011 04:10 pm stevenmartell

Contributed libraries from Steve Martell --directory contrib/statslib

89 07/14/2011 03:50 pm stevenmartell

duplicate declaration of "double lgam(double x)" in df13tester.cpp and in cgamdev.cpp. Commented out lines 942-1049 in df13tester.cpp

88 07/14/2011 11:42 am jsibert

changes to mod_hess.cpp and model7.cpp

87 07/13/2011 01:32 pm dseiple

Removed duplicate double lgam(double) function from df13incbet.cpp

86 07/13/2011 10:43 am dseiple

Fix for lgam bug on the mac os. Removed duplicate symboles and consolidated to df11fun.* files. Removed df1fun.* files. Removed copy commands from the makefiles.

85 07/12/2011 06:36 pm jsibert

change 81 to 101 cmpdif_file_name in fvar.hpp

84 07/12/2011 05:58 pm jsibert

added contributed libraries to modules; streamlined INPUT section of Doxygile

83 07/12/2011 01:54 pm jsibert

clean compile on Dave's patches; errors in adcomp and catage example

82 07/12/2011 12:48 pm johnoel

Move glmmADMB folder because it conflicts with admb script.

81 07/12/2011 01:06 am cgrandin

Started adding library functions for PRIORS_SECTION. Also set up distribution library build objects for each platform. Added an example in the examples folder called simple-priors.

80 07/11/2011 07:35 pm cgrandin
79 07/11/2011 07:28 pm cgrandin

clean script for use while developing

78 07/11/2011 07:27 pm cgrandin

Remove hard coded paths

77 07/11/2011 05:42 pm cgrandin
76 07/11/2011 05:29 pm cgrandin
75 07/11/2011 03:48 pm johnoel

Sandbox GPU development.

74 07/11/2011 03:40 pm cgrandin

PRIORS_SECTION implementation. Lexer only at this point.

73 07/11/2011 02:58 pm johnoel

Add support for Oracle Solaris Studio 12.

72 07/11/2011 02:46 pm johnoel

Sandbox parallel development.

71 07/11/2011 02:45 pm johnoel

Sandbox priors development.

70 07/09/2011 10:22 am johnoel

Update borland installer config.

69 07/08/2011 06:30 pm johnoel

Update vc build folder.

68 07/08/2011 04:15 pm johnoel

Fix borland 5.5 builds.

67 07/07/2011 01:28 pm johnoel

Be able to verify with different ADMB_HOME paths.

66 07/06/2011 04:35 pm johnoel

Add binary installation procedure for macos.

65 07/06/2011 03:14 pm johnoel

Really fix glmmadmb vc build.

64 07/06/2011 11:51 am johnoel

Add fix for glmmadmb vc build contributed by Ben Bolker.

63 07/06/2011 11:04 am johnoel

Update ADMB version control URL.

62 07/06/2011 09:18 am cgrandin

Add support for MinGW 5.2

61 07/05/2011 12:49 pm johnoel

Add glmmadmb to examples.

60 07/01/2011 05:52 pm johnoel

Workaround for Intel compiler, use safe code instead of opt for a few functions.

59 06/28/2011 07:01 pm johnoel

Update Intel build procedure and version number to 10.1.

58 06/28/2011 06:14 pm johnoel

Fix Intel build by adding another character type to adstring::operator+.

57 06/28/2011 06:01 am andersn

fixed small typo in README.txt

56 06/27/2011 04:39 pm johnoel

Add place for user contributed files.

55 06/26/2011 05:05 pm jsibert

added dox for dvariable and related classes

54 06/23/2011 08:04 pm arnima

Replace 'std dev' with 'std.dev' in manuals and examples

53 06/23/2011 08:00 pm arnima

Write out 'std.dev' instead of 'std dev' in *.cor and *.std files

52 06/23/2011 07:58 pm arnima

Define 'sumsq' as alias of 'norm2'

51 06/23/2011 05:19 pm casper

Added matrix exponential for df1b2matrix

50 06/23/2011 02:50 pm casper

dmatrix version of matrix exponential expm

49 06/23/2011 12:32 pm jsibert

fix PI compile error in cgamdev.cpp

48 06/23/2011 10:55 am mbrooks

documented negative binomial density functions

47 06/23/2011 10:46 am arnima

Replace 3.14159* with PI everywhere

46 06/23/2011 10:11 am arnima

Define PI (and M_PI) in fvar.hpp

45 06/23/2011 09:40 am jsibert

changes to Doxyfile and dox Makefile

44 06/22/2011 05:24 pm arnima

Fix warnings in tpl2cpp.lex and tpl2rem.lex

43 06/22/2011 04:51 pm dseiple

undo of revision 37

42 06/22/2011 03:23 pm arnima

Simplify and comment CXXFLAGS and LDFLAGS in adcomp, adlink, and admb

41 06/22/2011 01:01 pm johnoel

Remove old scripts.

40 06/22/2011 12:57 pm johnoel

Remove unused file.

39 06/22/2011 12:55 pm johnoel

Fix scripts to pass CXXFLAGS and LDFLAGS to adcomp and adlink.

38 06/22/2011 12:09 pm johnoel

Add missing step in README.txt.

37 06/22/2011 10:12 am dseiple

removed duplicate gammln function. prevariable version instead of dvariable version.

36 06/21/2011 04:51 pm johnoel

Don't force build hs_sparse.cpp.

35 06/21/2011 04:04 pm johnoel

Add Mollie Brooks suggestion for MacOS users.

34 06/21/2011 04:00 pm andersn

doc for dvar sum and *

33 06/21/2011 03:25 pm jsibert

dox for RETURN_ARRAYS...

32 06/21/2011 03:00 pm andersn

doc for min max og dvar_vector

31 06/21/2011 02:18 pm andersn

Added test case expm

30 06/21/2011 01:49 pm johnoel

Fix the flex builds.

29 06/21/2011 11:59 am jsibert

dox for RETURN_ARRAYS

28 06/21/2011 11:54 am johnoel

Add 'make docs' to configured makefile.

27 06/21/2011 11:35 am andersn

added docs

26 06/21/2011 10:34 am jsibert

changes to dox format

25 06/21/2011 01:06 am andersn

changed dox group

24 06/20/2011 06:54 pm andersn

corrected

23 06/20/2011 06:49 pm andersn

added doxygen for matrix exp

22 06/17/2011 09:45 pm johnoel

Add folder for branches.

21 06/16/2011 08:58 pm johnoel

Add Mollie Brooks suggestions.

20 06/10/2011 01:59 am johnoel

Correctly guess targeted arch for Intel compiler.

19 06/09/2011 04:41 am johnoel

Fix vc10 compiler error. Since atoll is not defined for MSVC use atol for now.

18 06/09/2011 03:49 am johnoel

Allow '.' in program path (ie c:\admb\model\v10.1\test), but remove .exe extension.

17 06/07/2011 01:42 am jsibert

add note about sm-super to admbmanual.dtx

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