This update includes priorslib library code and makefile changes to implement PRIORS_SECTION.
added ecolib, including templates and tests
Lexer now scans PRIORS_SECTION and LIKELIHOOD_SECTION and allows C++ code in both. It also prepends 'prior_' or 'like_' to the function names after the 'disributed as' operator ~ for the respective sections. The functions will be included in the contrib directory as libraries which will be wrappers for the statslib library which is also in the contrib directory. The makefiles will be modified to link to these libraries. CG & WL
changes to dox for Weihai
Scanner prior name (prior_name) and definition (prior_def) regular expressions now allow for whitespace around the tilde. Also a prior on a function call can now be defined, i.e. log(q) ~ dnorm(0,1). Also some changes by Weihai: "Most updates are in the define_prior, it allow users having any spaces around ~, and around their argument lists, I also setup the distribution mirror link there, not sure if that is the right way to go, which also need another user defined function see trim() at the end of file. See my attached rat example, which based on Mark's example converting winbugs to admb, first model on winbugs examples....
Update to Doxyfile with help info for contrib/statslib
Contributed libraries from Steve Martell --directory contrib/statslib
duplicate declaration of "double lgam(double x)" in df13tester.cpp and in cgamdev.cpp. Commented out lines 942-1049 in df13tester.cpp
changes to mod_hess.cpp and model7.cpp
Removed duplicate double lgam(double) function from df13incbet.cpp
Fix for lgam bug on the mac os. Removed duplicate symboles and consolidated to df11fun.* files. Removed df1fun.* files. Removed copy commands from the makefiles.
change 81 to 101 cmpdif_file_name in fvar.hpp
added contributed libraries to modules; streamlined INPUT section of Doxygile
clean compile on Dave's patches; errors in adcomp and catage example
Move glmmADMB folder because it conflicts with admb script.
Started adding library functions for PRIORS_SECTION. Also set up distribution library build objects for each platform. Added an example in the examples folder called simple-priors.
clean script for use while developing
Remove hard coded paths
Sandbox GPU development.
PRIORS_SECTION implementation. Lexer only at this point.
Add support for Oracle Solaris Studio 12.
Sandbox parallel development.
Sandbox priors development.
Update borland installer config.
Update vc build folder.
Fix borland 5.5 builds.
Be able to verify with different ADMB_HOME paths.
Add binary installation procedure for macos.
Really fix glmmadmb vc build.
Add fix for glmmadmb vc build contributed by Ben Bolker.
Update ADMB version control URL.
Add support for MinGW 5.2
Add glmmadmb to examples.
Workaround for Intel compiler, use safe code instead of opt for a few functions.
Update Intel build procedure and version number to 10.1.
Fix Intel build by adding another character type to adstring::operator+.
fixed small typo in README.txt
Add place for user contributed files.
added dox for dvariable and related classes
Replace 'std dev' with 'std.dev' in manuals and examples
Write out 'std.dev' instead of 'std dev' in *.cor and *.std files
Define 'sumsq' as alias of 'norm2'
Added matrix exponential for df1b2matrix
dmatrix version of matrix exponential expm
fix PI compile error in cgamdev.cpp
documented negative binomial density functions
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