Clean out windows flex output files.
Hardcode ADMB_HOME in examples/Makefile.
Remove need to set Variables in verify.
Fix issue for dos builds that have sh.exe or bash.exe in PATH.
add FMM group to mainpage and fmin to FMM group
Some fixes for windows build.
Clean compiled files.
Add MINGW_HOME variable to scripts to use existing compiler instead of in utilities\mingw.
Fix broken utilities batch file.
Fix broken mingw script.
Fix warning by initialize with integer with 0 instead of 0.0.
Improve build files and scripts.
Added int unvar=1; to that was missing in void function_minimizer::trust_region_update in f1b2trs.cpp
Remove unused variable.
Comment out ununused debug code.
Do not use soft links with mingw or cygwin shells.
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