Initial merge from davef.
For merging davef and trunk.
Re-Include geolocation tests.
Fix configure script, svnversion now outputs 'Unversioned directory' for non subversion folder.
Added programs that canbe used to verify the integrity of the covariance matrix stuff.
Another correction of sign in the covariance calculations
[ADMB Users] difference between ADMB-RE and R/mgcv in SEs ....
Don't do some contrib.
Copy working threaded branch.
Fixes undefined linker errors in previous commit.
Add dave optimizations for u*inv(M)*u in spatial
Give full name of Jan Jaap Poos in README.txt
Fix log_density_poisson in ADMB-RE manual
Fix quotes, \item indent, and 80 cols in ADMB-RE manual
Fixes for bcb
Fixes for union example.
Dave's changes to get spatial working.
Add pthread flags.
Delete any temporary files before running tpl2rem.
fixes for nested example. todo: spatial is brokendiffences: diet and lidar
Go back to test target.
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